miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|13247730|gb|BF271971.2|BF271971 ATTTTCCCATTTCTCTCTGCCTGCAAAAATCCCACATACAACCTTTTACTTCCATTTGATCATTTTTCTTCTCCTCTTTG
AACCTAGGACCTGGGGGTTCAGTTTTAAATGCAAGGTGGTGGCGGCGGCGGTTCTGAAAGTGGGTCAATGTCTACAGTGT
CAAGGGATGAGAACATGGTGGTGTCTTCTGAAGATTCTTCATGCCCGGATGAGTCTGGGTTGGAGTTGGGTCTTGGTTTG
AGCCTTGGTGGTGGTGGTGGTGGTGGTGGCGGCGGCCGCCAAGGCGGTGGTTTTAAGATGCATCATGTTTCAAAAGGTGG
TCCATATGCTAGGATTTTGACTGCTAAAGATTTCCCTTCTTCATCATCATCTTCATCGTCGTCATCATCATCATCCTCAC
CATCTTTAAGCAAAGCTAATGTCACAGCTGGGACCAAGAGAACTGCTGAATCTGTTGCTGTTGCTGCTAACGGATCTAGT
CAAGTTGTGGGGTGGCCTCCTATCAGAGCTTATAGAATGAATAGCATGGTTAATCAAGCAAAAGTGCTGACAATGGAGAA
CCGCANAAAGGAGACCTCGATGGTCGAGAACAGCAGCATCGGCGGCTATCGTAACGATGGTAACACTAAGCTGAAGAAAT
CCACGTTTGTGAAGGTGAATATGGATGGAACCCCAATAGGAAGGAAGGTCGATCTGAATGCCCATGAATCGTATGAAAAG
TTAGCGAAAACGTTGGAAGATATGTTTCTCGAAACCGGCCCGAATGTCAATCCATCTTGATCAACCGCGCTGCAGCTTTG
TTTGTTGAACAAGATGACAAGACACTCGAAACTGCTGAATGATCATCCGATTTCTGGC




Most similar to sp|Q38829|IAA11_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q38829|IAA11_ARATH Auxin-responsive protein IAA11 OS=Arabidopsis
           thaliana GN=IAA11 PE=1 SV=1
          Length = 246

 Score =  121 bits (304), Expect = 5e-27
 Identities = 66/114 (57%), Positives = 81/114 (71%)
 Frame = +1

Query: 412 KANVTAGTKRTAESVAVAANGSSQVVGWPPIRAYRMNSMVNQAKVLTMENRXKETSMVEN 591
           +A+V AG KRTA+S+A     S QVVGWPPIR YRMNSMVNQAK    E+   E S   N
Sbjct: 68  RASVIAGIKRTADSMAAT---SGQVVGWPPIRTYRMNSMVNQAKASATEDPNLEISQAVN 124

Query: 592 SSIGGYRNDGNTKLKKSTFVKVNMDGTPIGRKVDLNAHESYEKLAKTLEDMFLE 753
            +    R+D +TK++ S FVKV MDG PIGRK+DLNAH+ YE L+ TLE+MFL+
Sbjct: 125 KN----RSD-STKMRNSMFVKVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLK 173